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Crystal structure of N-terminal domain of human galectin-8 with D- lactose

Analyse Crystal structure of N-terminal domain of human galectin-8 with D- lactose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2YXS
Type
protein
Length
150 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Galectin-8 variant
UniProt
Q59E97
Ligands
BGC, GAL

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 59% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AGalectin-8 variantprotein1502% helix, 59% strandQ59E97

Ligands and binding sites

  • BGC · beta-D-glucopyranose · sugar · chains A
  • GAL · beta-D-galactopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (engineered).

Compared structures

  • 2YXS · Crystal Structure of N-terminal domain of human galectin-8 with D-lactose · the same entry in another collection · chain A against A, TM-score 1.00

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