Research workbench
Crystal structure of mgs domain of carbamoyl-phosphate synthetase from homo sapiens
Analyse Crystal structure of mgs domain of carbamoyl-phosphate synthetase from homo… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YVQ
- Type
- protein
- Length
- 134 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbamoyl-phosphate synthase
- EC
- 6.3.4.16
- UniProt
- P31327
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbamoyl-phosphate synthase (EC 6.3.4.16) | protein | 134 | 49% helix, 15% strand | P31327 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.39 | 0.80 | 26 | empty |
| 2 | 58 | 0.27 | 0.73 | 16 | empty |
Compared structures
- 2YVQ · Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens · the same entry in another collection · chain A against A, TM-score 1.00
- P31327 · AlphaFold monomer V2.0 prediction for carbamoyl-phosphate synthase [ammonia]… · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31327
- Elsewhere: RCSB PDB 2YVQ · PDBe 2YVQ · UniProt P31327
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