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The structure of bamb from E. COLI

Analyse The structure of bamb from E. COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2YH3
Type: protein
Length: 362 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipoprotein yfgl
UniProt: P77774
Pockets: 4 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipoprotein yfgl	protein	362	0% helix, 47% strand	P77774

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	200	0.66	0.85	34	empty
2	67	0.65	0.94	24	empty
3	338	0.57	0.76	34	empty
4	63	0.37	0.79	19	empty

Compared structures

2YH3 · The structure of BamB from E. coli · the same entry in another collection · chain A against A, TM-score 1.00
P77774 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bamb (P77774) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P77774
Elsewhere: RCSB PDB 2YH3 · PDBe 2YH3 · UniProt P77774

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