Research workbench
Crystal structure of inulosucrase from lactobacillus johnsonii NCC533
Analyse Crystal structure of inulosucrase from lactobacillus johnsonii NCC533 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YFR
- Type
- protein
- Length
- 533 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Levansucrase
- EC
- 2.4.1.9
- UniProt
- Q74K42
- Ligands
- CA, SO4, CL
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Levansucrase (EC 2.4.1.9) | protein | 533 | 18% helix, 38% strand | Q74K42 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- SO4 · Sulfate ion · ion · 9 copies · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 9 copies · chains A
- ACT · Acetate ion · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.49 | 0.77 | 26 | GOL |
| 2 | 68 | 0.34 | 0.76 | 14 | empty |
| 3 | 69 | 0.29 | 0.74 | 13 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q74K42
- Elsewhere: RCSB PDB 2YFR · PDBe 2YFR · UniProt Q74K42
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