Research workbench
Sinr, master regulator of biofilm formation in bacillus subtilis
Analyse Sinr, master regulator of biofilm formation in bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YAL
- Type
- protein
- Length
- 77 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hth-type transcriptional regulator sinr
- UniProt
- P06533
- Ligands
- NI
Structure
x-ray diffraction · 2 distinct chains · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hth-type transcriptional regulator sinr | protein | 39 | 64% helix, 0% strand | P06533 |
| B | Hth-type transcriptional regulator sinr | protein | 38 | 68% helix, 0% strand | P06533 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1475 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 2YAL · SinR, Master Regulator of biofilm formation in Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- P06533 · AlphaFold monomer V2.0 prediction for hth-type transcriptional regulator sinr (P06533) · a predicted model of the same protein · chain B against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06533
- Elsewhere: RCSB PDB 2YAL · PDBe 2YAL · UniProt P06533
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