Research workbench
The cyanobacterial PP2C-like phosphatase tppha requires three metals in the catalytic center for efficient catalysis
Analyse The cyanobacterial PP2C-like phosphatase tppha requires three metals in the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2Y09
- Type
- protein
- Length
- 236 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein serin-threonin phosphatase
- UniProt
- Q8DGS1
- Ligands
- CA, MG
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein serin-threonin phosphatase | protein | 236 | 34% helix, 28% strand | Q8DGS1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.40 | 0.77 | 16 | empty |
| 2 | 74 | 0.34 | 0.76 | 16 | CA |
Compared structures
- 2Y09 · The cyanobacterial PP2C-like phosphatase tPphA requires three metals in the catalytic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DGS1
- Elsewhere: RCSB PDB 2Y09 · PDBe 2Y09 · UniProt Q8DGS1
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