Research workbench
Pentameric ligand gated ion channel glic in complex with cesium ion (cs+)
Analyse Pentameric ligand gated ion channel glic in complex with cesium ion (cs+) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XQ6
- Type
- protein
- Length
- 1,550 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLR4197 protein
- UniProt
- Q7NDN8
- Ligands
- CS
- Pockets
- 20 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | GLR4197 protein | protein | 310 | 33% helix, 29% strand | Q7NDN8 |
Ligands and binding sites
- CS · Cesium ion · metal · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 19 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 958 | 0.81 | 0.82 | 52 | CS |
| 2 | 343 | 0.69 | 0.82 | 44 | empty |
| 3 | 59 | 0.68 | 0.96 | 18 | empty |
| 4 | 55 | 0.67 | 0.95 | 19 | empty |
| 5 | 241 | 0.67 | 0.84 | 36 | empty |
Interfaces
10 interfaces between chains.
- A–B · 2460 Ų buried · 22 hydrogen bonds · protein-protein
- D–E · 2355 Ų buried · 18 hydrogen bonds · protein-protein
- C–D · 2335 Ų buried · 16 hydrogen bonds · protein-protein
- A–E · 2058 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 2004 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2XQ6 · Pentameric ligand gated ion channel GLIC in complex with cesium ion (Cs+) · the same entry in another collection · chain A against A, TM-score 1.00
- Q7NDN8 · AlphaFold monomer V2.0 prediction for proton-gated ion channel (Q7NDN8) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7NDN8
- Elsewhere: RCSB PDB 2XQ6 · PDBe 2XQ6 · UniProt Q7NDN8
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