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X-ray structure of the N-terminal domain of the flocculin FLO5 from saccharomyces cerevisiae in complex with calcium and MAN5(D2-D3)

Analyse X-ray structure of the N-terminal domain of the flocculin FLO5 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2XJR
Type: protein
Length: 257 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flocculation protein FLO5
UniProt: P38894
Ligands: MAN, CA, NA, CL

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flocculation protein FLO5	protein	257	8% helix, 39% strand	P38894

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 4 copies · chains A
CA · Calcium ion · metal · 2 copies · chains A
NA · Sodium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

2XJR · X-ray structure of the N-terminal domain of the flocculin Flo5 from Saccharomyces… · the same entry in another collection · chain A against A, TM-score 1.00
P38894 · AlphaFold monomer V2.0 prediction for flocculation protein FLO5 (P38894) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38894
Elsewhere: RCSB PDB 2XJR · PDBe 2XJR · UniProt P38894

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