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Crystal structure of the SAC7D-derived IGG1-binder C3-C24S
Analyse Crystal structure of the SAC7D-derived IGG1-binder C3-C24S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XIW
- Type
- protein
- Length
- 131 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-binding protein 7D
- UniProt
- P13123
- Ligands
- SO4, CL
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-binding protein 7D | protein | 64 | 30% helix, 55% strand | P13123 |
| B | DNA-binding protein 7D | protein | 67 | 30% helix, 52% strand | P13123 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.29 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 666 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13123
- Elsewhere: RCSB PDB 2XIW · PDBe 2XIW · UniProt P13123
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