UniProt P13123
DNA-binding protein 7b (P13123)
DNA-binding protein 7b (UniProt P13123): 41 experimental structures and 1 predicted model on GenesisL1, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P13123
- Protein
- DNA-binding protein 7b
- Experimental structures
- 41
- Predicted models
- 1
- Pockets
- 1 · 0 records with a druggable one
Structures
42 records of P13123 in the MolNFT archive: 41 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1AZP | Hyperthermophile chromosomal protein SAC7D bound with kinked DNA duplex | x-ray diffraction | A | — | — |
| 1AZP | Hyperthermophile chromosomal protein SAC7D bound with kinked DNA duplex | x-ray diffraction | A | — | — |
| 1AZQ | Hyperthermophile chromosomal protein SAC7D bound with kinked DNA duplex | x-ray diffraction | A | — | — |
| 1AZQ | Hyperthermophile chromosomal protein SAC7D bound with kinked DNA duplex | x-ray diffraction | A | — | — |
| 1BF4 | Chromosomal DNA-binding protein SSO7D/D(GCGAACGC) complex | x-ray diffraction | A | — | — |
| 1BF4 | Chromosomal DNA-binding protein SSO7D/D(GCGAACGC) complex | x-ray diffraction | A | — | — |
| 1CA5 | Intercalation site of hyperthermophile chromosomal protein SSO7D/SAC7D bound to DNA | x-ray diffraction | A | — | — |
| 1CA5 | Intercalation site of hyperthermophile chromosomal protein SSO7D/SAC7D bound to DNA | x-ray diffraction | A | — | — |
| 1CA6 | Intercalation site of hyperthermophile chromosomal protein SSO7D/SAC7D bound to DNA | x-ray diffraction | A | — | — |
| 1CA6 | Intercalation site of hyperthermophile chromosomal protein SSO7D/SAC7D bound to DNA | x-ray diffraction | A | — | — |
| 1SAP | Hyperthermophile protein, relaxation matrix refinement structure | solution nmr | A | — | — |
| 1SAP | Hyperthermophile protein, relaxation matrix refinement structure | solution nmr | A | — | — |
| 1WD0 | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | x-ray diffraction | A | — | — |
| 1WD0 | Crystal structures of the hyperthermophilic chromosomal protein SAC7D in complex with DNA decamers | x-ray diffraction | A | — | — |
| 1WD1 | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | x-ray diffraction | A | — | — |
| 1WD1 | Crystal structures of the hyperthermophilic chromosomal protein SAC7D in complex with DNA decamers | x-ray diffraction | A | — | — |
| 1WTO | Hyperthermophile chromosomal protein SAC7D double mutant V26F/M29F in complex with DNA GCGATCGC | x-ray diffraction | A | — | — |
| 1WTO | Hyperthermophile chromosomal protein SAC7D double mutant V26F/M29F in complex with DNA gcgatcgc | x-ray diffraction | A | — | — |
| 1WTP | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GCGA(UBr)CGC | x-ray diffraction | A, B | — | — |
| 1WTP | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GCGA(UBR)CGC | x-ray diffraction | A, B | — | — |
| 1WTQ | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GTAATTAC | x-ray diffraction | A | — | — |
| 1WTQ | Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA gtaattac | x-ray diffraction | A | — | — |
| 1WTR | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA GCGATCGC | x-ray diffraction | A | — | — |
| 1WTR | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA gcgatcgc | x-ray diffraction | A | — | — |
| 1WTV | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA GTAATTAC | x-ray diffraction | A | — | — |
| 1WTV | Hyperthermophile chromosomal protein SAC7D single mutant M29A in complex with DNA gtaattac | x-ray diffraction | A | — | — |
| 1WTW | Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA GCGATCGC | x-ray diffraction | A | — | — |
| 1WTW | Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA gcgatcgc | x-ray diffraction | A | — | — |
| 1WTX | Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA GTAATTAC | x-ray diffraction | A | — | — |
| 1WTX | Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA gtaattac | x-ray diffraction | A | — | — |
| 1WVL | Crystal Structure of Multimeric DNA-binding Protein Sac7d-GCN4 with DNA decamer | x-ray diffraction | A | — | — |
| 1WVL | Crystal structure of multimeric DNA-binding protein SAC7D- GCN4 with DNA decamer | x-ray diffraction | A | — | — |
| 1XX8 | NMR Structure of the W24A Mutant of the Hyperthermophile Sac7d Protein | solution nmr | A | — | — |
| 1XX8 | NMR structure of the W24A mutant of the hyperthermophile SAC7D protein | solution nmr | A | — | — |
| 1XYI | Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA… | x-ray diffraction | A | — | — |
| 1XYI | Hyperthermophile chromosomal protein SAC7D double mutant VAL26ALA/MET29ALA in complex with DNA… | x-ray diffraction | A | — | — |
| 2XIW | Crystal structure of the Sac7d-derived IgG1-binder C3-C24S | x-ray diffraction | A, B | — | — |
| 2XIW | Crystal structure of the SAC7D-derived IGG1-binder C3-C24S | x-ray diffraction | A, B | — | — |
| 8CMN | 18mer DNA mimic Foldamer with an aliphatic linker in complex with Sac7d wild protein | x-ray diffraction | AA | — | — |
| 8Q2M | 18mer DNA mimic Foldamer with an Aliphatic linker in complex with Sac7d V26A/M29A protein | x-ray diffraction | AA | — | 1 (best 0.32) |
| 8QPC | 18mer DNA mimic Foldamer with an Aromatic linker in complex with Sac7d V26A/M29A protein | x-ray diffraction | AA | — | — |
| P13123 | AlphaFold monomer V2.0 prediction for DNA-binding protein 7D (P13123) | predicted | A | — | — |
Experiment against prediction
- 1WTP chain A against the predicted model P13123: TM-score 0.98, RMSD 0.35 Å
- 1WTP chain A against the predicted model P13123: TM-score 0.98, RMSD 0.35 Å
- 1WTP chain B against the predicted model P13123: TM-score 0.97, RMSD 0.47 Å
- 1WTP chain B against the predicted model P13123: TM-score 0.97, RMSD 0.47 Å
- 8CMN chain AA against the predicted model P13123: TM-score 0.97, RMSD 0.52 Å
- 1WTQ chain A against the predicted model P13123: TM-score 0.96, RMSD 0.56 Å
- 1WTQ chain A against the predicted model P13123: TM-score 0.96, RMSD 0.56 Å
- 1WVL chain A against the predicted model P13123: TM-score 0.80, RMSD 0.59 Å
- 1WVL chain A against the predicted model P13123: TM-score 0.80, RMSD 0.59 Å
- 8QPC chain AA against the predicted model P13123: TM-score 0.96, RMSD 0.57 Å
Elsewhere
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