MolNFT v1 · #26589 · protein + DNA
Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA gcgatcgc
1WTW · 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3': “Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA gcgatcgc”. X-ray diffraction. MolNFT v1 #26589 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1WTW
- Type
- protein + DNA
- Length
- 82 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'; DNA-binding proteins 7A/7B/7D
- UniProt
- P13123
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, C | 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' | dna | 8 | — | — |
| A | DNA-binding proteins 7A/7B/7D | protein | 66 | 27% helix, 53% strand | P13123 |
Interfaces
3 interfaces between chains.
- C–A · 413 Ų buried · 4 hydrogen bonds · protein-nucleic
- B–A · 381 Ų buried · 9 hydrogen bonds · protein-nucleic
- B–C · 356 Ų buried · 32 hydrogen bonds · nucleic-nucleic
Compared structures
- 1WTW · Hyperthermophile chromosomal protein SAC7D single mutant V26A in complex with DNA GCGATCGC · the same entry in another collection · chain B against B, TM-score 1.00
- P13123 · AlphaFold monomer V2.0 prediction for DNA-binding protein 7D (P13123) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13123
- Elsewhere: RCSB PDB 1WTW · PDBe 1WTW · UniProt P13123
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.