MolNFT v1 · #26035 · protein + DNA
Crystal structures of the hyperthermophilic chromosomal protein SAC7D in complex with DNA decamers
1WD0 · 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3': “Crystal structures of the hyperthermophilic chromosomal protein SAC7D in complex with DNA decamers”. X-ray diffraction. MolNFT v1 #26035 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1WD0
- Type
- protein + DNA
- Length
- 86 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3'; DNA-binding proteins 7A/7B/7D
- UniProt
- P13123
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, C | 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3' | dna | 10 | — | — |
| A | DNA-binding proteins 7A/7B/7D | protein | 66 | 26% helix, 53% strand | P13123 |
Interfaces
3 interfaces between chains.
- C–A · 424 Ų buried · 5 hydrogen bonds · protein-nucleic
- B–C · 375 Ų buried · 31 hydrogen bonds · nucleic-nucleic
- B–A · 359 Ų buried · 6 hydrogen bonds · protein-nucleic
Compared structures
- 1WD0 · Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA… · the same entry in another collection · chain B against B, TM-score 1.00
- P13123 · AlphaFold monomer V2.0 prediction for DNA-binding protein 7D (P13123) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13123
- Elsewhere: RCSB PDB 1WD0 · PDBe 1WD0 · UniProt P13123
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