Research workbench
Structure of putative deoxyribonuclease TATDN1 isoform a
Analyse Structure of putative deoxyribonuclease TATDN1 isoform a in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XIO
- Type
- protein
- Length
- 293 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative deoxyribonuclease TATDN1
- EC
- 3.1.21.-
- UniProt
- Q6P1N9
- Ligands
- NA, NI
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative deoxyribonuclease TATDN1 (EC 3.1.21.-) | protein | 293 | 46% helix, 17% strand | Q6P1N9 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
- NI · Nickel (II) ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 218 | 0.47 | 0.74 | 25 | EDO |
| 2 | 94 | 0.37 | 0.75 | 20 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2XIO · Structure of putative deoxyribonuclease TATDN1 isoform a · the same entry in another collection · chain A against A, TM-score 1.00
- Q6P1N9 · AlphaFold monomer V2.0 prediction for putative deoxyribonuclease TATDN1 (Q6P1N9) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6P1N9
- Elsewhere: RCSB PDB 2XIO · PDBe 2XIO · UniProt Q6P1N9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.