Research workbench
Tailspike protein mutant D339N of E.COLI bacteriophage HK620 in complex with hexasaccharide
Analyse Tailspike protein mutant D339N of E.COLI bacteriophage HK620 in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2X6X
- Type
- protein
- Length
- 598 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tailspike protein HK620
- UniProt
- Q9AYY6
- Ligands
- GLA, GLC, RAM, NAG
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tailspike protein HK620 | protein | 598 | 10% helix, 43% strand | Q9AYY6 |
Ligands and binding sites
- GLA · alpha-D-galactopyranose · sugar · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
- RAM · alpha-L-rhamnopyranose · sugar · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.47 | 0.77 | 36 | GLA |
| 2 | 121 | 0.43 | 0.76 | 17 | RAM, NAG |
| 3 | 95 | 0.34 | 0.74 | 18 | empty |
Compared structures
- 2X6X · Tailspike protein mutant D339N of E.coli bacteriophage HK620 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AYY6
- Elsewhere: RCSB PDB 2X6X · PDBe 2X6X · UniProt Q9AYY6
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