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Crystal structure of sclerotinia sclerotiorum agglutinin ssa in complex with gal-BETA1,3-galnac

Analyse Crystal structure of sclerotinia sclerotiorum agglutinin ssa in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2X2T
Type
protein
Length
152 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Agglutinin
UniProt
A7XUK7
Ligands
NGA, GAL, SO4

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 42% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAgglutininprotein15212% helix, 42% strandA7XUK7

Ligands and binding sites

  • NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · chains A
  • GAL · beta-D-galactopyranose · sugar · chains A
  • SO4 · Sulfate ion · ion · 4 copies · chains A
  • PG4 · Tetraethylene glycol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 2X2T · CRYSTAL STRUCTURE OF SCLEROTINIA SCLEROTIORUM AGGLUTININ SSA in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
  • A7XUK7 · AlphaFold monomer V2.0 prediction for agglutinin (A7XUK7) · a predicted model of the same protein · chain A against A, TM-score 0.99

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