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Galectin domain of porcine adenovirus type 4 nadc-1 isolate fibre complexed with lacto-N-neo-tetraose

Analyse Galectin domain of porcine adenovirus type 4 nadc-1 isolate fibre complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WT1
Type: protein
Length: 299 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative fiber protein
UniProt: Q83467
Ligands: GAL, BGC, NAG, NO3
Pockets: 2 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative fiber protein	protein	299	3% helix, 50% strand	Q83467

Ligands and binding sites

GAL · beta-D-galactopyranose · sugar · 2 copies · chains A
BGC · beta-D-glucopyranose · sugar · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
NO3 · Nitrate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	425	0.60	0.75	36	GAL, NAG, NO3
2	99	0.37	0.75	22	empty

Compared structures

2WT1 · Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q83467
Elsewhere: RCSB PDB 2WT1 · PDBe 2WT1 · UniProt Q83467

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