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Galectin domain of porcine adenovirus type 4 nadc-1 isolate fibre complexed with N-acetyl-lactosamine

Analyse Galectin domain of porcine adenovirus type 4 nadc-1 isolate fibre complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2WT0
Type: protein
Length: 300 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative fiber protein
UniProt: Q83467
Ligands: NAG, GAL, NO3
Pockets: 3 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative fiber protein	protein	300	2% helix, 50% strand	Q83467

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
GAL · beta-D-galactopyranose · sugar · chains A
NO3 · Nitrate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	387	0.61	0.77	35	NO3
2	152	0.48	0.77	28	NO3
3	60	0.29	0.74	16	empty

Compared structures

2WT0 · Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q83467
Elsewhere: RCSB PDB 2WT0 · PDBe 2WT0 · UniProt Q83467

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