Research workbench
Crystal structure analysis of SERA5E from plasmodium falciparum with loop 690-700 ordered
Analyse Crystal structure analysis of SERA5E from plasmodium falciparum with loop… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2WBF
- Type
- protein
- Length
- 265 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serine-repeat antigen protein
- UniProt
- P69193
- Ligands
- CA, CL
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Serine-repeat antigen protein | protein | 265 | 26% helix, 20% strand | P69193 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains X
- CL · Chloride ion · ion · 4 copies · chains X
- DMS · Dimethyl sulfoxide · additive · 6 copies · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.33 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 2WBF · Crystal Structure Analysis of SERA5E from plasmodium falciparum with loop 690-700 ordered · the same entry in another collection · chain X against X, TM-score 1.00
- P69193 · AlphaFold monomer V2.0 prediction for serine-repeat antigen protein 5 (P69193) · a predicted model of the same protein · chain X against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69193
- Elsewhere: RCSB PDB 2WBF · PDBe 2WBF · UniProt P69193
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