Research workbench
Amino terminal 67KDA domain of escherichia COLI DNA topoisomerase I (residues 2-590 of mature protein) cloning artifact adds two residues to the amino-terminus which were not observed in the experimental electron density (gly-2, ser-1).
Analyse Amino terminal 67KDA domain of escherichia COLI DNA topoisomerase I (residues… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ECL
- Type
- protein
- Length
- 552 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Escherichia COLI topoisomerase I
- EC
- 5.99.1.2
- UniProt
- P06612
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Escherichia COLI topoisomerase I (EC 5.99.1.2) | protein | 552 | 45% helix, 20% strand | P06612 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 379 | 0.63 | 0.78 | 47 | empty |
| 2 | 91 | 0.61 | 0.88 | 18 | empty |
| 3 | 54 | 0.34 | 0.79 | 14 | empty |
| 4 | 65 | 0.26 | 0.72 | 16 | empty |
Compared structures
- 1ECL · Amino terminal 67KDA domain of escherichia COLI DNA topoisomerase I (residues 2-590 of… · the same entry in another collection · chain A against A, TM-score 1.00
- P06612 · AlphaFold monomer V2.0 prediction for DNA topoisomerase 1 (P06612) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06612
- Elsewhere: RCSB PDB 1ECL · PDBe 1ECL · UniProt P06612
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