Research workbench
The N-terminal domain of merr-like protein tipal bound to promoter DNA
Analyse The N-terminal domain of merr-like protein tipal bound to promoter DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2VZ4
- Type
- protein + DNA
- Length
- 121 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hth-type transcriptional activator tipa; 5'-D(*CP*TP*CP*CP*TP*CP*AP*CP*GP*TP…
- UniProt
- P0A4T9
Structure
x-ray diffraction · 2 distinct chains · 68% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hth-type transcriptional activator tipa | protein | 100 | 68% helix, 6% strand | P0A4T9 |
| B | 5'-D(*CP*TP*CP*CP*TP*CP*AP*CP*GP*TP *CP*AP*CP*GP*TP*GP*AP*GP*GP*TP*G)-3' | dna | 21 | — | — |
Interfaces
1 interface between chains.
- A–B · 317 Ų buried · 8 hydrogen bonds · protein-nucleic
Compared structures
- 2VZ4 · The N-terminal domain of MerR-like protein TipAL bound to promoter DNA · the same entry in another collection · chain A against A, TM-score 1.00
- P0A4T9 · AlphaFold monomer V2.0 prediction for hth-type transcriptional activator tipa (P0A4T9) · a predicted model of the same protein · chain A against A, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A4T9
- Elsewhere: RCSB PDB 2VZ4 · PDBe 2VZ4 · UniProt P0A4T9
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