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Chitin deacetylase family member from encephalitozoon cuniculi

Analyse Chitin deacetylase family member from encephalitozoon cuniculi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2VYO
Type
protein
Length
206 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Polysaccharide deacetylase domain-containing protein ECU11_0510
EC
3.5.1.41
UniProt
Q8SU65
Ligands
CA, ZN, CL
Pockets
1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
APolysaccharide deacetylase domain-containing protein ECU11_0510 (EC 3.5.1.41)protein20644% helix, 17% strandQ8SU65

Ligands and binding sites

  • CA · Calcium ion · metal · 4 copies · chains A
  • ZN · Zinc ion · metal · 2 copies · chains A
  • CL · Chloride ion · ion · chains A
  • ACT · Acetate ion · additive · chains A
  • IMD · Imidazole · additive · chains A
  • EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1650.360.7815empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

  • 2VYO · Chitin deacetylase family member from Encephalitozoon cuniculi · the same entry in another collection · chain A against A, TM-score 1.00
  • Q8SU65 · AlphaFold monomer V2.0 prediction for polysaccharide deacetylase domain-containing… · a predicted model of the same protein · chain A against A, TM-score 1.00

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