Research workbench
Crystal structure of the di-haem cytochrome C peroxidase from pseudomonas aeruginosa
Analyse Crystal structure of the di-haem cytochrome C peroxidase from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1EB7
- Type
- protein
- Length
- 317 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C551 peroxidase
- EC
- 1.11.1.5
- UniProt
- P14532
- Ligands
- HEC, CA
- Pockets
- 1 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C551 peroxidase (EC 1.11.1.5) | protein | 317 | 38% helix, 9% strand | P14532 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 705 | 0.87 | 0.91 | 94 | HEC |
Modifications
Observed in the structure: 4 cofactor (heme c attachment).
Compared structures
- 1EB7 · Crystal structure of the di-haem cytochrome c peroxidase from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
- P14532 · AlphaFold monomer V2.0 prediction for cytochrome C551 peroxidase (P14532) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14532
- Elsewhere: RCSB PDB 1EB7 · PDBe 1EB7 · UniProt P14532
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