Research workbench
Structure of the campylobacter jejuni antigen PEB1A, an aspartate and glutamate receptor with bound aspartate
Analyse Structure of the campylobacter jejuni antigen PEB1A, an aspartate and glutamate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2V25
- Type
- protein
- Length
- 462 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major cell-binding factor
- UniProt
- Q0P9X8
- Ligands
- ASP, ZN
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Major cell-binding factor | protein | 231 | 37% helix, 26% strand | Q0P9X8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 677 | 0.70 | 0.78 | 63 | empty |
Interfaces
1 interface between chains.
- A–B · 394 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 2V25 · Structure of the Campylobacter jejuni antigen Peb1A, an aspartate and glutamate receptor… · the same entry in another collection · chain B against B, TM-score 1.00
- Q0P9X8 · AlphaFold monomer V2.0 prediction for major cell-binding factor (Q0P9X8) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0P9X8
- Elsewhere: RCSB PDB 2V25 · PDBe 2V25 · UniProt Q0P9X8
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