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Solution structure of the ggq domain of yaej protein from escherichia COLI

Analyse Solution structure of the ggq domain of yaej protein from escherichia COLI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RTX
Type: protein
Length: 121 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidyl-tRNA hydrolase yaej
EC: 3.1.1.29
UniProt: P40711
Pockets: 1 · best druggability 0.36

Structure

solution nmr · 1 distinct chain · 22% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidyl-tRNA hydrolase yaej (EC 3.1.1.29)	protein	121	22% helix, 21% strand	P40711

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	120	0.36	0.73	20	empty

Compared structures

2RTX · Solution structure of the GGQ domain of YaeJ protein from Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
P40711 · AlphaFold monomer V2.0 prediction for peptidyl-tRNA hydrolase arfb (P40711) · a predicted model of the same protein · chain A against A, TM-score 0.72

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P40711
Elsewhere: RCSB PDB 2RTX · PDBe 2RTX · UniProt P40711

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