Research workbench
Native structure of chimaeric amylase from B. amyloliquefaciens and B. licheniformis at 1.7A
Analyse Native structure of chimaeric amylase from B. amyloliquefaciens and B.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1E43
- Type
- protein
- Length
- 483 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-amylase
- EC
- 3.2.1.1
- UniProt
- P00692, P06278
- Ligands
- CA, NA
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-amylase (EC 3.2.1.1) | protein | 483 | 26% helix, 25% strand | P00692, P06278 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.53 | 0.79 | 25 | empty |
| 2 | 60 | 0.34 | 0.77 | 13 | empty |
Compared structures
- 1E43 · Native structure of chimaeric amylase from B. amyloliquefaciens and B. licheniformis at… · the same entry in another collection · chain A against A, TM-score 1.00
- P00692 · AlphaFold monomer V2.0 prediction for alpha-amylase (P00692) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P06278 · AlphaFold monomer V2.0 prediction for alpha-amylase (P06278) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00692
- Every structure of UniProt P06278
- Elsewhere: RCSB PDB 1E43 · PDBe 1E43 · UniProt P00692 · UniProt P06278
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