Research workbench
Crystal structure of lipa from serratia marcescens
Analyse Crystal structure of lipa from serratia marcescens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QUA
- Type
- protein
- Length
- 615 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular lipase
- EC
- 3.1.1.3
- UniProt
- Q59933
- Ligands
- CA
- Pockets
- 7 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular lipase (EC 3.1.1.3) | protein | 615 | 26% helix, 26% strand | Q59933 |
Ligands and binding sites
- CA · Calcium ion · metal · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 536 | 0.71 | 0.79 | 42 | empty |
| 2 | 265 | 0.56 | 0.77 | 36 | empty |
| 3 | 74 | 0.51 | 0.85 | 17 | empty |
| 4 | 171 | 0.50 | 0.77 | 32 | empty |
| 5 | 88 | 0.45 | 0.81 | 24 | empty |
Compared structures
- 2QUA · Crystal structure of LipA from Serratia marcescens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59933
- Elsewhere: RCSB PDB 2QUA · PDBe 2QUA · UniProt Q59933
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