Research workbench
Crystal structure of the extracellular domain of human gip receptor in complex with the hormone gip
Analyse Crystal structure of the extracellular domain of human gip receptor in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QKH
- Type
- protein
- Length
- 126 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucose-dependent insulinotropic polypeptide; Glucose-dependent insulinotropic…
- UniProt
- P09681, P48546
- Ligands
- ZB2, ZB1, ZB3, ZB0, GLC
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Glucose-dependent insulinotropic polypeptide | protein | 32 | 72% helix, 0% strand | P09681 |
| A | Glucose-dependent insulinotropic polypeptide receptor | protein | 94 | 30% helix, 21% strand | P48546 |
Ligands and binding sites
- ZB2 · 2-O-methyl-alpha-D-glucopyranose · ligand · 2 copies · chains B
- ZB1 · 3-O-methyl-alpha-D-glucopyranose · ligand · chains B
- ZB3 · 2,6-di-O-methyl-alpha-D-glucopyranose · ligand · chains B
- ZB0 · 2,3-di-O-methyl-alpha-D-glucopyranose · ligand · chains B
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains B
- TAR · D(-)-tartaric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 642 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 2QKH · Crystal structure of the extracellular domain of human GIP receptor in complex with the… · the same entry in another collection · chain B against B, TM-score 1.00
- P48546 · AlphaFold monomer V2.0 prediction for gastric inhibitory polypeptide receptor (P48546) · a predicted model of the same protein · chain A against A, TM-score 0.94
- P09681 · AlphaFold monomer V2.0 prediction for gastric inhibitory polypeptide (P09681) · a predicted model of the same protein · chain B against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09681
- Every structure of UniProt P48546
- Elsewhere: RCSB PDB 2QKH · PDBe 2QKH · UniProt P09681 · UniProt P48546
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