Research workbench
Crystal structure of pathogenesis-related protein llpr-10.2B from yellow lupine in complex with cytokinin
Analyse Crystal structure of pathogenesis-related protein llpr-10.2B from yellow lupine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2QIM
- Type
- protein
- Length
- 157 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PR10.2B
- UniProt
- Q9LLQ2
- Ligands
- ZEA, CA
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PR10.2B | protein | 157 | 29% helix, 45% strand | Q9LLQ2 |
Ligands and binding sites
- ZEA · (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol · ligand · 4 copies · chains A
- CA · Calcium ion · metal · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 708 | 0.80 | 0.83 | 69 | ZEA |
Compared structures
- 2QIM · Crystal Structure of Pathogenesis-related Protein LlPR-10.2B from yellow lupine in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LLQ2 · AlphaFold monomer V2.0 prediction for class 10 plant pathogenesis- related protein 2B… · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LLQ2
- Elsewhere: RCSB PDB 2QIM · PDBe 2QIM · UniProt Q9LLQ2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.