Research workbench
Human STARD13 (DLC2) lipid transfer and protein localization domain
Analyse Human STARD13 (DLC2) lipid transfer and protein localization domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PSO
- Type
- protein
- Length
- 583 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Star-related lipid transfer protein 13
- UniProt
- Q9Y3M8
- Pockets
- 10 · best druggability 0.78
Structure
x-ray diffraction · 3 distinct chains · 22% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Star-related lipid transfer protein 13 | protein | 197 | 22% helix, 36% strand | Q9Y3M8 |
| B | Star-related lipid transfer protein 13 | protein | 198 | 24% helix, 40% strand | Q9Y3M8 |
| C | Star-related lipid transfer protein 13 | protein | 188 | 21% helix, 36% strand | Q9Y3M8 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 405 | 0.78 | 0.87 | 47 | empty |
| 2 | 406 | 0.74 | 0.84 | 49 | empty |
| 3 | 358 | 0.72 | 0.84 | 42 | empty |
| 4 | 232 | 0.53 | 0.77 | 45 | empty |
| 5 | 245 | 0.52 | 0.76 | 27 | empty |
Interfaces
2 interfaces between chains.
- B–C · 867 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 560 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 2PSO · Human StarD13 (DLC2) lipid transfer and protein localization domain · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y3M8 · AlphaFold monomer V2.0 prediction for star-related lipid transfer protein 13 (Q9Y3M8) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y3M8
- Elsewhere: RCSB PDB 2PSO · PDBe 2PSO · UniProt Q9Y3M8
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