MolNFT v1 · #439133 · protein
AlphaFold monomer V2.0 prediction for star-related lipid transfer protein 13 (Q9Y3M8)
Q9Y3M8: “AlphaFold monomer V2.0 prediction for star-related lipid transfer protein 13 (Q9Y3M8)”. 7 pockets (best druggability 0.81). MolNFT v1 #439133 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9Y3M8
- Type
- protein
- Length
- 1,113 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5c4adF1416281C09AE8eE1cbb80fF7e44cE86F97
- Molecule
- Star-related lipid transfer protein 13
- UniProt
- Q9Y3M8
- Pockets
- 7 · best druggability 0.81
Structure
1 distinct chain · 33% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Star-related lipid transfer protein 13 | protein | 1113 | 33% helix, 8% strand | Q9Y3M8 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1038 | 0.81 | 0.82 | 92 | empty |
| 2 | 460 | 0.80 | 0.87 | 64 | empty |
| 3 | 128 | 0.50 | 0.80 | 16 | empty |
| 4 | 214 | 0.48 | 0.74 | 32 | empty |
| 5 | 180 | 0.44 | 0.74 | 23 | empty |
Compared structures
- 2PSO · Human StarD13 (DLC2) lipid transfer and protein localization domain · an experimental structure of the same protein · chain A against A, TM-score 0.17
- 2PSO · Human STARD13 (DLC2) lipid transfer and protein localization domain · an experimental structure of the same protein · chain A against A, TM-score 0.17
- 2JW2 · Validation of inter-helical orientation of the steril-alpha-motif of human deleted in… · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2JW2 · Validation of inter-helical orientation of the steril-alpha-motif of human deleted in… · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2H80 · NMR structures of SAM domain of deleted in liver cancer 2 (DLC2) · an experimental structure of the same protein · chain A against A, TM-score 0.06
- 2H80 · NMR structures of SAM domain of Deleted in Liver Cancer 2 (DLC2) · an experimental structure of the same protein · chain A against A, TM-score 0.06
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y3M8
- Elsewhere: UniProt Q9Y3M8 · AlphaFold DB Q9Y3M8
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