Research workbench
Solution structure of the syntrophin PDZ domain in complex with the peptide gvkeslv, NMR, 15 structures
Analyse Solution structure of the syntrophin PDZ domain in complex with the peptide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PDZ
- Type
- protein
- Length
- 91 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Syntrophin; Peptide gvkeslv
- UniProt
- Q61234
Structure
solution nmr · 2 distinct chains · 21% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Syntrophin | protein | 86 | 22% helix, 38% strand | Q61234 |
| B | Peptide gvkeslv | protein | 5 | 0% helix, 20% strand | — |
Interfaces
1 interface between chains.
- A–B · 433 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 2PDZ · Solution structure of the syntrophin PDZ domain in complex with the peptide gvkeslv, NMR… · the same entry in another collection · chain A against A, TM-score 1.00
- Q61234 · AlphaFold monomer V2.0 prediction for alpha-1-syntrophin (Q61234) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q61234
- Elsewhere: RCSB PDB 2PDZ · PDBe 2PDZ · UniProt Q61234
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