Research workbench
Laminin alpha 2 chain LG4-5 domain pair
Analyse Laminin alpha 2 chain LG4-5 domain pair in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1DYK
- Type
- protein
- Length
- 374 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Laminin alpha 2 chain
- UniProt
- Q60675
- Ligands
- CA
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Laminin alpha 2 chain | protein | 374 | 2% helix, 48% strand | Q60675 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 249 | 0.56 | 0.78 | 35 | empty |
| 2 | 130 | 0.50 | 0.80 | 22 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1DYK · Laminin alpha 2 chain LG4-5 domain pair · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q60675
- Elsewhere: RCSB PDB 1DYK · PDBe 1DYK · UniProt Q60675
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