Research workbench

D domain of B-trcp

Analyse D domain of B-trcp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2P64
Type: protein
Length: 103 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: F-BOX/WD repeat protein 1A
UniProt: Q9Y297
Ligands: CD

Structure

x-ray diffraction · 2 distinct chains · 81% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	F-BOX/WD repeat protein 1A	protein	51	78% helix, 0% strand	Q9Y297
B	F-BOX/WD repeat protein 1A	protein	52	83% helix, 0% strand	Q9Y297

Ligands and binding sites

CD · Cadmium ion · metal · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 2053 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

2P64 · D domain of b-TrCP · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y297 · AlphaFold monomer V2.0 prediction for F-BOX/WD repeat-containing protein 1A (Q9Y297) · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y297
Elsewhere: RCSB PDB 2P64 · PDBe 2P64 · UniProt Q9Y297

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