GL1X · GenesisL1 explorer

Research workbench

Structural basis for a novel interaction between AIP4 and beta-pix

Analyse Structural basis for a novel interaction between AIP4 and beta-pix in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2P4R
Type
protein
Length
71 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Rho guanine nucleotide exchange factor 7; E3 ubiquitin-protein ligase itchy homolog
EC
6.3.2.-
UniProt
O55043, Q96J02
Ligands
SO4

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 41% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ARho guanine nucleotide exchange factor 7protein555% helix, 53% strandO55043
TE3 ubiquitin-protein ligase itchy homolog (EC 6.3.2.-)protein160% helix, 0% strandQ96J02

Ligands and binding sites

  • SO4 · Sulfate ion · ion · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–T · 679 Ų buried · 13 hydrogen bonds · protein-protein

Compared structures

  • 2P4R · Structural basis for a novel interaction between AIP4 and beta-PIX · the same entry in another collection · chain A against A, TM-score 1.00
  • O55043 · AlphaFold monomer V2.0 prediction for rho guanine nucleotide exchange factor 7 (O55043) · a predicted model of the same protein · chain A against A, TM-score 0.97
  • Q96J02 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase itchy homolog (Q96J02) · a predicted model of the same protein · chain T against A, TM-score 0.21

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.