Research workbench
Crystal structure of inla S192N Y369S/MEC1 complex
Analyse Crystal structure of inla S192N Y369S/MEC1 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OMW
- Type
- protein
- Length
- 566 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Internalin-a; Epithelial-cadherin
- UniProt
- P25146, P09803
- Ligands
- CL
- Pockets
- 5 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Internalin-a | protein | 461 | 16% helix, 24% strand | P25146 |
| B | Epithelial-cadherin | protein | 105 | 4% helix, 44% strand | P09803 |
Ligands and binding sites
- CL · Chloride ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 359 | 0.65 | 0.80 | 41 | empty |
| 2 | 175 | 0.55 | 0.80 | 27 | CL |
| 3 | 140 | 0.50 | 0.79 | 34 | empty |
| 4 | 68 | 0.40 | 0.80 | 26 | empty |
| 5 | 85 | 0.35 | 0.76 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 1366 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25146
- Every structure of UniProt P09803
- Elsewhere: RCSB PDB 2OMW · PDBe 2OMW · UniProt P25146 · UniProt P09803
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