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Crystal structure of human RAB9B in complex with a GTP analogue

Analyse Crystal structure of human RAB9B in complex with a GTP analogue in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2OCB
Type: protein
Length: 173 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RAS-related protein rab-9B
UniProt: Q9NP90
Ligands: GNP, MG, UNX
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RAS-related protein rab-9B	protein	173	34% helix, 25% strand	Q9NP90

Ligands and binding sites

GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
MG · Magnesium ion · metal · chains A
UNX · Unknown atom or ion · ion · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	163	0.52	0.79	31	MG, GNP

Compared structures

2OCB · Crystal structure of human RAB9B in complex with a GTP analogue · the same entry in another collection · chain A against A, TM-score 1.00
Q9NP90 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-9B (Q9NP90) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9NP90
Elsewhere: RCSB PDB 2OCB · PDBe 2OCB · UniProt Q9NP90

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