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Solution structure of the RPN13 pru domain engaging the HPLIC2 ubl domain

Analyse Solution structure of the RPN13 pru domain engaging the HPLIC2 ubl domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2NBV
Type: protein
Length: 188 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Proteasomal ubiquitin receptor ADRM1; Ubiquilin-2
UniProt: Q16186, Q9UHD9

Structure

solution nmr · 2 distinct chains · 17% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proteasomal ubiquitin receptor ADRM1	protein	110	15% helix, 48% strand	Q16186
B	Ubiquilin-2	protein	78	21% helix, 33% strand	Q9UHD9

Interfaces

1 interface between chains.

A–B · 623 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

2NBV · Solution structure of the Rpn13 Pru domain engaging the hPLIC2 UBL domain · the same entry in another collection · chain A against A, TM-score 1.00
Q16186 · AlphaFold monomer V2.0 prediction for proteasomal ubiquitin receptor ADRM1 (Q16186) · a predicted model of the same protein · chain A against A, TM-score 0.95
Q9UHD9 · AlphaFold monomer V2.0 prediction for ubiquilin-2 (Q9UHD9) · a predicted model of the same protein · chain B against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q16186
Every structure of UniProt Q9UHD9
Elsewhere: RCSB PDB 2NBV · PDBe 2NBV · UniProt Q16186 · UniProt Q9UHD9

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