Research workbench
SNU17P-PML1P structure intermediate during res complex assembly
Analyse SNU17P-PML1P structure intermediate during res complex assembly in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MY3
- Type
- protein
- Length
- 141 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- U2 snrnp component IST3; Pre-mRNA leakage protein 1
- UniProt
- P40565, Q07930
- Pockets
- 1 · best druggability 0.29
Structure
solution nmr · 2 distinct chains · 28% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U2 snrnp component IST3 | protein | 118 | 31% helix, 24% strand | P40565 |
| B | Pre-mRNA leakage protein 1 | protein | 23 | 13% helix, 0% strand | Q07930 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.29 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 902 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 2MY3 · Snu17p-Pml1p structure intermediate during RES complex assembly · the same entry in another collection · chain B against B, TM-score 1.00
- P40565 · AlphaFold monomer V2.0 prediction for U2 snrnp component IST3 (P40565) · a predicted model of the same protein · chain A against A, TM-score 0.76
- Q07930 · AlphaFold monomer V2.0 prediction for pre-mRNA leakage protein 1 (Q07930) · a predicted model of the same protein · chain B against A, TM-score 0.25
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40565
- Every structure of UniProt Q07930
- Elsewhere: RCSB PDB 2MY3 · PDBe 2MY3 · UniProt P40565 · UniProt Q07930
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