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NMR solution structure of the ubiquitin like domain (ubl) of DNA- damage-inducible 1 protein (DDI1)

Analyse NMR solution structure of the ubiquitin like domain (ubl) of DNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MRP
Type: protein
Length: 79 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA damage-inducible protein 1
UniProt: P40087
Pockets: 1 · best druggability 0.46

Structure

solution nmr · 1 distinct chain · 24% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA damage-inducible protein 1	protein	79	24% helix, 25% strand	P40087

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.46	0.81	19	empty

Compared structures

2MRP · NMR solution structure of the Ubiquitin like domain (UBL) of DNA-damage-inducible 1… · the same entry in another collection · chain A against A, TM-score 1.00
P40087 · AlphaFold monomer V2.0 prediction for DNA damage-inducible protein 1 (P40087) · a predicted model of the same protein · chain A against A, TM-score 0.81

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P40087
Elsewhere: RCSB PDB 2MRP · PDBe 2MRP · UniProt P40087

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