UniProt P40087
P40087
P40087 (UniProt P40087): 16 experimental structures and 1 predicted model on GenesisL1. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P40087
- Experimental structures
- 16
- Predicted models
- 1
Structures
17 records of P40087 in the MolNFT archive: 16 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2I1A | A Retroviral Protease-Like Domain in the Eukaryotic Protein Ddi1 | x-ray diffraction | A, B, C, D | — | — |
| 2I1A | A retroviral protease-like domain in the eukaryotic protein DDI1 | x-ray diffraction | A, B, C, D | — | — |
| 2MR9 | NMR structure of UBA domain of DNA-damage-inducible 1 protein (Ddi1) | solution nmr | A | — | — |
| 2MR9 | NMR structure of uba domain of DNA-damage-inducible 1 protein (DDI1) | solution nmr | A | — | — |
| 2MRO | Structure of the complex of ubiquitin and the UBA domain from DNA-damage-inducible 1 protein (Ddi1) | solution nmr | B | — | — |
| 2MRO | Structure of the complex of ubiquitin and the uba domain from DNA- damage-inducible 1 protein (DDI1) | solution nmr | B | — | — |
| 2MRP | NMR solution structure of the Ubiquitin like domain (UBL) of DNA-damage-inducible 1 protein (Ddi1) | solution nmr | A | — | — |
| 2MRP | NMR solution structure of the ubiquitin like domain (ubl) of DNA- damage-inducible 1 protein (DDI1) | solution nmr | A | — | — |
| 2MWS | Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1 | solution nmr | B | — | — |
| 2MWS | Structure of the complex of ubiquitin and the ubiquitin-like (ubl) domain of DDI1 | solution nmr | B | — | — |
| 2N7E | Solution structure of the UBL domain of yeast Ddi1 | solution nmr | A | — | — |
| 2N7E | Solution structure of the ubl domain of yeast DDI1 | solution nmr | A | — | — |
| 4Z2Z | New crystal structure of yeast Ddi1 aspartyl protease reveals substrate engagement mode | x-ray diffraction | A, B | — | — |
| 4Z2Z | New crystal structure of yeast DDI1 aspartyl protease reveals substrate engagement mode | x-ray diffraction | A, B | — | — |
| 5KES | Solution structure of the yeast Ddi1 HDD domain | solution nmr | A | — | — |
| 5KES | Solution structure of the yeast DDI1 hdd domain | solution nmr | A | — | — |
| P40087 | AlphaFold monomer V2.0 prediction for DNA damage-inducible protein 1 (P40087) | predicted | A | — | — |
Experiment against prediction
- 2I1A chain D against the predicted model P40087: TM-score 0.99, RMSD 0.41 Å
- 2I1A chain D against the predicted model P40087: TM-score 0.99, RMSD 0.41 Å
- 2I1A chain A against the predicted model P40087: TM-score 0.99, RMSD 0.46 Å
- 2I1A chain A against the predicted model P40087: TM-score 0.99, RMSD 0.46 Å
- 2I1A chain C against the predicted model P40087: TM-score 0.99, RMSD 0.49 Å
- 2I1A chain C against the predicted model P40087: TM-score 0.99, RMSD 0.49 Å
- 2I1A chain B against the predicted model P40087: TM-score 0.97, RMSD 1.21 Å
- 2I1A chain B against the predicted model P40087: TM-score 0.97, RMSD 1.21 Å
- 4Z2Z chain A against the predicted model P40087: TM-score 0.93, RMSD 0.95 Å
- 4Z2Z chain A against the predicted model P40087: TM-score 0.93, RMSD 0.95 Å
Elsewhere
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