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K11-linked diubiquitin average solution structure at pH 6.8, 0 mm nacl

Analyse K11-linked diubiquitin average solution structure at pH 6.8, 0 mm nacl in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MBO
Type: protein
Length: 144 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin
UniProt: P0CG48
Pockets: 1 · best druggability 0.45

Structure

solution nmr · 1 distinct chain · 25% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ubiquitin	protein	72	25% helix, 35% strand	P0CG48

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.45	0.79	20	empty

Interfaces

1 interface between chains.

A–B · 230 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

2MBO · K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0CG48
Elsewhere: RCSB PDB 2MBO · PDBe 2MBO · UniProt P0CG48

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