Research workbench
Backbone 1H, 13C, and 15N chemical shift assignments for LMO2(LIM2)- LDB1(LID)
Analyse Backbone 1H, 13C, and 15N chemical shift assignments for LMO2(LIM2)- LDB1(LID) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LXD
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rhombotin-2,LIM domain-binding protein 1
- UniProt
- P25801, P70662
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.46
Structure
solution nmr · 1 distinct chain · 10% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhombotin-2,LIM domain-binding protein 1 | protein | 123 | 10% helix, 11% strand | P25801, P70662 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.46 | 0.83 | 18 | empty |
Compared structures
- 2LXD · Backbone 1H, 13C, and 15N Chemical Shift Assignments for LMO2(LIM2)-Ldb1(LID) · the same entry in another collection · chain A against A, TM-score 1.00
- P25801 · AlphaFold monomer V2.0 prediction for rhombotin-2 (P25801) · a predicted model of the same protein · chain A against A, TM-score 0.45
- P70662 · AlphaFold monomer V2.0 prediction for lim domain-binding protein 1 (P70662) · a predicted model of the same protein · chain A against A, TM-score 0.38
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25801
- Every structure of UniProt P70662
- Elsewhere: RCSB PDB 2LXD · PDBe 2LXD · UniProt P25801 · UniProt P70662
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