Research workbench
Structure of the rhesus monkey TRIM5ALPHA pryspry domain
Analyse Structure of the rhesus monkey TRIM5ALPHA pryspry domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2LM3
- Type
- protein
- Length
- 205 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tripartite motif-containing protein 5
- EC
- 6.3.2.-
- UniProt
- Q0PF16
- Pockets
- 2 · best druggability 0.35
Structure
solution nmr · 1 distinct chain · 7% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tripartite motif-containing protein 5 (EC 6.3.2.-) | protein | 205 | 7% helix, 31% strand | Q0PF16 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.35 | 0.77 | 14 | empty |
| 2 | 52 | 0.34 | 0.78 | 16 | empty |
Compared structures
- 2LM3 · Structure of the rhesus monkey TRIM5alpha PRYSPRY domain · the same entry in another collection · chain A against A, TM-score 1.00
- Q0PF16 · AlphaFold monomer V2.0 prediction for tripartite motif-containing protein 5 (Q0PF16) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0PF16
- Elsewhere: RCSB PDB 2LM3 · PDBe 2LM3 · UniProt Q0PF16
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