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Backbone structure of ubiquitin determined using backbone amide noes and backbone N-H and N-C rdcs

Analyse Backbone structure of ubiquitin determined using backbone amide noes and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2LD9
Type: protein
Length: 77 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin
UniProt: P0CG48
Pockets: 1 · best druggability 0.72

Structure

solution nmr · 1 distinct chain · 16% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin	protein	77	16% helix, 27% strand	P0CG48

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	445	0.72	0.82	35	empty

Compared structures

2LD9 · Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0CG48
Elsewhere: RCSB PDB 2LD9 · PDBe 2LD9 · UniProt P0CG48

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