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NMR structure of calcium loaded, un-myristoylated human ncs-1

Analyse NMR structure of calcium loaded, un-myristoylated human ncs-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2LCP
Type
protein
Length
190 residues
Chains
1
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Neuronal calcium sensor 1
UniProt
P62166
Ligands
CA
Pockets
1 · best druggability 0.74

Structure

solution nmr · 1 distinct chain · 58% helix, 5% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ANeuronal calcium sensor 1protein19058% helix, 5% strandP62166

Ligands and binding sites

  • CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15080.740.8151empty

Compared structures

  • 2LCP · NMR structure of calcium loaded, un-myristoylated human NCS-1 · the same entry in another collection · chain A against A, TM-score 1.00
  • P62166 · AlphaFold monomer V2.0 prediction for neuronal calcium sensor 1 (P62166) · a predicted model of the same protein · chain A against A, TM-score 0.69

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