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Crystal structure of an isolated apical domain of groel

Analyse Crystal structure of an isolated apical domain of groel in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DK7
Type: protein
Length: 292 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Groel
UniProt: P0A6F5
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Groel	protein	146	34% helix, 33% strand	P0A6F5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.45	0.80	22	empty

Interfaces

1 interface between chains.

A–B · 364 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

1DK7 · Crystal structure of an isolated apical domain of groel · the same entry in another collection · chain A against A, TM-score 1.00
P0A6F5 · AlphaFold monomer V2.0 prediction for 60 kda chaperonin (P0A6F5) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A6F5
Elsewhere: RCSB PDB 1DK7 · PDBe 1DK7 · UniProt P0A6F5

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