Research workbench
NMR structure of stem-loop 4 from the human 7SK snrna in complex with arginine
Analyse NMR structure of stem-loop 4 from the human 7SK snrna in complex with arginine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KX8
- Type
- RNA
- Length
- 42 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 7SK
- Ligands
- ARG
- Pockets
- 2 · best druggability 0.51
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 7SK | rna | 42 | — | — |
Ligands and binding sites
- ARG · Arginine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.51 | 0.73 | 20 | empty |
| 2 | 158 | 0.39 | 0.74 | 13 | ARG |
Compared structures
- 2KX8 · NMR structure of stem-loop 4 from the human 7SK snRNA in complex with arginine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2KX8 · PDBe 2KX8
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