Research workbench
Mechanism for the selective interaction of C-terminal eh-domain proteins with specific npf-containing partners
Analyse Mechanism for the selective interaction of C-terminal eh-domain proteins with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KSP
- Type
- protein
- Length
- 120 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Eh domain-containing protein 1; Mical L1 like peptide
- UniProt
- Q9H4M9, Q8N3F8
- Ligands
- CA
Structure
solution nmr · 2 distinct chains · 44% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Eh domain-containing protein 1 | protein | 105 | 50% helix, 4% strand | Q9H4M9 |
| B | Mical L1 like peptide | protein | 15 | 0% helix, 0% strand | Q8N3F8 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 390 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 2KSP · Mechanism for the selective interaction of C-terminal EH-domain proteins with specific… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H4M9 · AlphaFold monomer V2.0 prediction for eh domain-containing protein 1 (Q9H4M9) · a predicted model of the same protein · chain A against A, TM-score 0.86
- Q8N3F8 · AlphaFold monomer V2.0 prediction for mical-like protein 1 (Q8N3F8) · a predicted model of the same protein · chain B against A, TM-score 0.32
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H4M9
- Every structure of UniProt Q8N3F8
- Elsewhere: RCSB PDB 2KSP · PDBe 2KSP · UniProt Q9H4M9 · UniProt Q8N3F8
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