Research workbench
Phosphorylation of sumo-interacting motif by CK2 enhances daxx sumo binding activity
Analyse Phosphorylation of sumo-interacting motif by CK2 enhances daxx sumo binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2KQS
- Type
- protein
- Length
- 117 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Small ubiquitin-related modifier 1; Death domain-associated protein 6
- UniProt
- P63165, Q9UER7
- Pockets
- 1 · best druggability 0.32
Structure
solution nmr · 2 distinct chains · 14% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small ubiquitin-related modifier 1 | protein | 97 | 16% helix, 29% strand | P63165 |
| B | Death domain-associated protein 6 | protein | 20 | 0% helix, 0% strand | Q9UER7 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.32 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 647 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 2KQS · Phosphorylation of SUMO-interacting motif by CK2 enhances Daxx SUMO binding activity · the same entry in another collection · chain A against A, TM-score 1.00
- P63165 · AlphaFold monomer V2.0 prediction for small ubiquitin-related modifier 1 (P63165) · a predicted model of the same protein · chain A against A, TM-score 0.72
- Q9UER7 · AlphaFold monomer V2.0 prediction for death domain-associated protein 6 (Q9UER7) · a predicted model of the same protein · chain B against A, TM-score 0.19
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63165
- Every structure of UniProt Q9UER7
- Elsewhere: RCSB PDB 2KQS · PDBe 2KQS · UniProt P63165 · UniProt Q9UER7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.