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First pbz domain of human aplf protein

Analyse First pbz domain of human aplf protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2KQB
Type: protein
Length: 55 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aprataxin and pnk-like factor
EC: 4.2.99.18
UniProt: Q8IW19
Ligands: ZN

Structure

solution nmr · 1 distinct chain · 7% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Aprataxin and pnk-like factor (EC 4.2.99.18)	protein	55	7% helix, 7% strand	Q8IW19

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

2KQB · First PBZ domain of human APLF protein · the same entry in another collection · chain A against A, TM-score 1.00
Q8IW19 · AlphaFold monomer V2.0 prediction for aprataxin and pnk-like factor (Q8IW19) · a predicted model of the same protein · chain A against A, TM-score 0.55

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8IW19
Elsewhere: RCSB PDB 2KQB · PDBe 2KQB · UniProt Q8IW19

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